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FR.1+C25572T+C337T+C882T(orf1a:A206V)+C14097T,C15017T(orf1b:A517V)+T28019C,C14599T,C25603T+G28374A(orf9b:G31R, N:G34E)
GISAID query: del28367_28375,T28019C,C14599T,C25603T
Note that the default …
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/314
XBB.1.5.94+A8434G, A15426G + A2730T(orf1a:K822M), T3766C + C7086T(orf1a:T2274I)+T3460C, C11460A(orf1a:S3732Y, NSP6_S163Y), C…
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JG.3+G20269T(Orf1b:A2268S),C21714T(S:T51I)
GISAID query: G20269T,C21714T,C23673T
No. of seqs: 31(Denmark 2 UK 2 Finland 2 France 10 Italy 8 Spain 5 Switzerland 1)
30 from this query, EPI_ISL_1841…
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**Defining Mutations:** `HK.12` > `A19720G(ORF1b:K2085E), A21603G(S:Q14R)`
**Query:** `A18492G, A19720G, A22629C`
**Earliest seq:** 2023-08-07 (`EPI_ISL_18105537`, Hubei, China)
**Latest seq:** 202…
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_Transferred from sars-cov-2-variants/lineage-proposals#516_
**Defining Mutations:** `EG.2` > `C26110T(ORF3a:P240S)` > `T19138C(ORF1b:F1891L), G23401T(S:Q613H), G24116T(S:A852S)`
**Query:** `G2340…
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_Transferred from sars-cov-2-variants/lineage-proposals#524_
**Defining Mutations:** `XBB.1.16` > `C7765T` > `C7081T, T22912C, C24210T(S:T883I)`
**Query:** `C7081T, T22912C, C24210T`
**Earliest s…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/794
HK.8+C25904T(Orf3a:S171L)+C25019T(S:D1153Y)
GISAID query: G25019T,C25904T,G22927T
No. of seqs: 55(Belgium 1 Canada 2 Ita…
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Just spotted this branch of HN.5 without Orf9:S63F, that have gained S:F490P and while it entered long term care homes in Alberta it was able to spread in many countries through December.
Tree:
…
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FL.4+A28615G+A25910G(orf3a:D173G),T22322C(S:S254P)
GISAID query: A25910G,A28615G
No. of seqs: 98(Australia 4 Austria 2 USA 5 South Korea 1 Oman 1 Malaysia 2 Israel 1 Italy 1 Ireland 1 Germany 1 Fran…
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```[tasklist]
### Multiple `EG.5.1*` Lineages with `S:T478R` or `S:T478I`
- [ ] [Branch 1](#branch_1) **EG.5.1.3** > G28038A(ORF8:V49I), G28851A(N:S193N) > C24082T > C22995G(**S:T478R**) [Query: `…