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There is a new term cellular transcription, child of transcription,
how come?
I have direct annotations to this term, even though I know I have never used it.
What is non-cellular transcription?
In …
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Doug
I wanted to check if you are developing code to handle metagenomic samples where there are a mixture of organisms with different translation tables?
Torsten
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Hi,
Recently I tried to assemble several BAC clones one by one. All clones were sequenced by Hiseq2000.
At first, I mapped all reads to BAC and E. coli genome sequences and resultant bam files consis…
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Hi.
I'm a microbiologist starting on bioinformatics. So... really, really naive in what concerns Linux.
I'm working with Ubuntu 12.04 and I have just installed harvest (following the instructions for…
pmsim updated
9 years ago
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So I'm testing your pipeline on some new stuff. I got it to run successfully with Chik a full genome virus like Dengue. I am trying to run it against another segmented virus and it failed:
my command…
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Figure 9: I could not understand this (granted, I am not a phylogeneticist). But, something seems wrong here. How can we compare PB1-PB1 TMRCAs to PB1-PB2 TMRCAs when PB1 and PB2 are not homologous? I…
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Figure 5: If I understand this figure correctly, the authors are using the BEAST MCC tree of each segment, looking at a particular point in the past, and counting the number of extant lineages that wo…
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The viruses used in this study may be collected from many different countries in different years. Are they good representatives of the two lineages of viruses that were co-circulating in the same loca…
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Warning about missing DTD's to be downloaded.
to replicate:
```
Python 2.7.5 (default, Aug 25 2013, 00:04:04)
[GCC 4.2.1 Compatible Apple LLVM 5.0 (clang-500.0.68)] on darwin
Type "help", "copyrigh…
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Viruses are not in the GOLD table that forms the basis for sequenced genomes. Add them somehow.