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Dear Alexander,
Excellent pipeline! RASCL allows me to easily set up selection pressure analysis for each of genes of SARS-CoV-2.
However, I met such issue in conserved genes (e.g. nonstructural…
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The `PANCAN_mutation` dataset ([online doc](https://genome-cancer.soe.ucsc.edu/proj/site/xena/datapages/?dataset=TCGA.PANCAN.sampleMap/PANCAN_mutation&host=https://tcga.xenahubs.net)) contains several…
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We need to find someone to implement this.
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목적 : 2개의 신호를 받아 특정 유전자의 발현을 유도하기 위함. violacein 생산과 연결해 사용할 예정.
조건 : 길이가 너무 길지 않아야 하고, 성공한 사례가 있는 파츠 중심으로 조사.
*T7 RNA polymerase gene with two internal amber codons (T7ptag) & amber suppressor gene…
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I am running HybPiper using a reference that has 17879 genes. I'm testing the pipeline on one sample before going for more. First, I got the following BiopythonWarning which I am not sure how crucial …
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I am not sure this behaviour is by design, but GAG currently ejects UTR features into the file genome.ignored.gff , resulting in the final annotation genome.gff to have no UTR annotations either. This…
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The align subcommand seems to execute fine, but does not finish, and tail -f of log file stops at exactly the same place (whether it's my own or the example Test_Data provided in the repo).
The lo…
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Hello Admin!
This work is more interesting.. I would like to know how the CAI is calculated for the sequences. Could you please share the code for the CAI computation?
Thanks!
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give a short description of what it is, what it does, and any limitations (e.g. what's the biggest dataset people should think of using, roughly how long will it take, etc).
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Hello,
I've been encountering an issue for creating index of ColabDB. It looks like it is a memory consumption issue. Could you help me with this matter please?
Thank you in advance for your hel…