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### Describe the issue
According to the website bucket s3://sra-pub-run-odp/ is publicly accessible.
However, I am having some issues downloading data.
$ aws s3 cp s3://sra-pub-run-odp/sra/SR…
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**Describe the bug**
Example command from the `README.rst` is not working on a fresh install.
**To Reproduce**
Steps to reproduce the behavior:
```console
pip install pysradb;
pysradb metadata…
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Found by @pheintzman
https://iiif.elifesciences.org/lax/73346%2Felife-73346-fig2-figsupp8-v2.tif/full/1500,/0/default.jpg
from paper
https://elifesciences.org/articles/73346#data
who cit…
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[fastq-dump-2.8.0_error.txt](https://github.com/kfuku52/amalgkit/files/11773371/fastq-dump-2.8.0_error.txt)
Full log is attached, and below is just the part with the error.
I now have the pipel…
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Hi there,
I was trying to run SingleM, but it crashes all time, apparently when it's parsing the DIAMOND output (full debug log further down):
```
[...]
02/07/2024 01:28:14 PM ERROR: Process (DI…
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AWS megatests is now running nicely and we’re trying to set up all (most) nf-core pipelines to run a big dataset. We need to identify a set of public data to run benchmarks for the pipeline.
The id…
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### Data Owner Name
Kernelogic
### Data Owner Country/Region
Canada
### Data Owner Industry
Life Science / Healthcare
### Website
https://singularity-browser.kernelogic.ca
### …
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Hello!
I have an issue trying to extract the fastq-file from this sample: SRR6305512. It works with all other samples within the same project, except this one. I am using version 2.11.0, but I also…
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### Description of feature
Based on the docs, it looks like it is not currently possible to get files from dbGAP. Is this something that could be added? This can be done with 'prefetch' and 'faster…