-
hey can you help me with that issue?
RepeatMasker works on my computer well.
`(earlGrey) marcin@marcin-B550-AORUS-ELITE-AX-V2:~/EarlGrey$ ./earlGrey -g bombyxMori.fasta. -s bombyxMori -o ./repea…
-
Hello,
I have installed repeatmodeler using conda, and then tried again installing from source with multiple different versions. Everything seems to be fine during the installation step, including …
-
I tried to test run FunGAP again, but have error for running the RepeatModeler. The out.log is shown below. Please help.
============ New Run 2022-09-02 15:01:03.026664 ============
[09-02 15:01] ST…
-
Hi,
Thank you for your amazing tool!
I encountered the error when I did scsnvmisc cells.
The code and error is bellow.
```shell
(scsnv) [root@scRNA scsnv]# scsnvmisc cells -o sample_data/ s…
-
Hello,
During my experience, I met some questions:
The genome masking was performed using TRF and Repeatmasker according to this pipeline (Segmental duplications and their variation in a complete …
-
I'm resuming a progressive cactus run, which failed on our GPU cluster due to running out of RAM. We kinda have enough RAM there, but the queue penalties are quite intense for requesting it, and it se…
-
I just installed the latest version of funannote via conda and have dependency issues below. Any advice?
Checking dependencies for 1.8.15
-----------------------------------------------------…
-
I've been using EarlGrey on several plant genomes and noticed an abundance of RC / Helitron annotations around a gene class of interest. However, a closer look at these annotations and I'm not seeing …
-
Hello!
Thanks for developing this tool!
I was wondering what is reasoning behind a maximum of 5% divergence in the first step: pseudo-alignment using minimap.
Specially as minimap allows for more…
-
Hi all,
We are working with a repeat annotation in .gff format that was generated with RepeatMasker, but has since undergone some manual filtering.
The original alignment files have been lost, b…