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Hej
I tried to assign the taxonomy using each of the provided reference files, and looked at the consistency of the assignments.
I wrote a function to categorise each assignment as "all three agree…
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- HMP tree does not have a fake root
- Root with branching has node name ""
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Hi Donovan,
I am getting this error when I run refinem gene_profile
blabla@kw1200:~/$ refinem gene_profile 1_call_genes/ 2_scaffold_stats/scaffold_stats.tsv ~/DB/refinem_db/genome_db.genes.faa ~/DB/…
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Is there any mock data where you have measured some metabolites or phenotypes for bench-marking supervised machine learning methods ?
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Issue: we need to decide on the specific settings for running muscle.
Pasting comments on this specific issue from Matt:
"Hi Sally, just to add to the email I sent about the script changes and …
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usually these just make as specific of assignments as they can.
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Hey there,
I'm using EMIRGE as a preliminary contamination screen for single-cell genomes. Unfortunately, EMIRGE is exhausting the RAM on our compute server (264Gb RAM, running RHEL). I have the 64-b…
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@JohnvanDam @krchristie @deustp01
As part of the cilia GO project, we need to make sure that GO and Reactome align on representation of ciliary processes.
Reactome recently worked on this area, this …
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Hi,
thanks a lot for this software. The concept is very convincing to me.
I just like to ask, why the base quality score is not used during the clustering and de-replication process?
Is it not poss…