-
## Describe your idea for a new feature
The build-in SISTR pipeline has a REST API endpoint for accessing results `analysis/sistr`, but the plugin version of this pipeline does not have such an endpo…
-
Would be nice to add the IDR analysis that is currently carried out by the ENCODE pipelines:
https://github.com/kundajelab/atac-seq-pipeline
https://docs.google.com/document/d/1f0Cm4vRyDQDu0bMehHD7P…
-
Working on MCMC analysis with ugali and tyring to use `g-i` bands has shown that [ugali.analysis.source](https://github.com/DarkEnergySurvey/ugali/blob/master/ugali/analysis/source.py) seems to create…
-
Hi, I want to produce a vcf file (for phylogenetic analysis) for 15 whole genome, same-species assemblies. I am following the step-by-step pipeline documented under the heading "Yeast Genome" in Min…
-
Hi
I'm really interested in using your pipeline for TE analysis of multiple different non-model organisms.
I'd prefer to use your tool through Docker on the command line to speed up throughput o…
-
Hi,
I got the following error message from kallisto quant, but kallisto seems to be on version 0.50.0 and it doesn't explain what those versions refer to.
```
[quant] fragment length distributio…
-
#### Project link
https://github.com/orgs/geneontology/projects/156
#### Project description
Currently, there are no systematic reports produced for the stored GO-CAM (TTL or blazegraph) mode…
-
Opening a discussion here to track the implementation of changes to how QC results are reported and recorded in Metamist.
**Summary of the summary:** The way the QC results are generated and sto…
-
### Softwares
FSL
### Input data
raw data
### Additional context
Use of feat process and analysis: run-level + subject-level + group-level.
### List of tasks
Please tick the boxes below once th…
-
There are many pipelines for which the flow analysis does not provide a convenient or predictable ordering of steps. Because some steps have side effects not manifest in the pipeline, it may be necess…