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Hello,
I want to construct a pantranscriptome with two haplotypes in a diploid.
1.What I have done
```
# Construct variation graph
wfmash -t 72 -p 90 -s 100000 ./BM#1#chr4_RagTag.fa.gz ./BM#2#chr…
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TLDR: If you cannot produce any fusions, it may be an issue with your GTF file.
The GTF file:
a) cannot use `_` in chromosome names
b) in column 9, must have a `gene_name` field
c) in column 9…
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I've previously posted a response to another issue as i've been having trouble with some of my data. I'm just going to briefly recap what i wrote as i think the original comment was probably missed:
…
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The following GFFs either lack Note: attributes or have none containing GO: terms. (@maxglycine it is indeed a common problem with a number of Glycine and Medicago annotations.) Please fix.
- [ ] A…
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# Li, Dong, Wu et al. 2016
## bioRxiv
*http://doi.org/10.1101/086421*
## Abstract
> Characterizing the binding behaviors of RNA-binding proteins (RBPs) is important for understanding
thei…
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Hi, I'm receiving the following error
```
WARNING [bioservices.BioDBNet:130]: The URL (https://biodbnet-abcc.ncifcrf.gov/webServices/rest.php/biodbnetRestApi.json) provided cannot be reached.
CR…
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Hello,
I am not clear what 'translation factor activity, nucleic acid binding' versus 'translation repressor activity, non-nucleic acid binding' are supposed to represent.
* GO:0045183 transla…
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Hi all,
Not sure if this is a duplicate of #38.
I've been trying to get CHEUI up and running but have been running into an issue with the preprocessing. Using the C++ preprocessing script (compi…
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Hi,
I have some questions on how to interpret the output of the splicing module and prioritize identified alterations.
First, I want to confirm that any alterations reported by the splicing modu…
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Whenever I run any command with latest official docker image of salmon, as an example:
```
docker run combinelab/salmon:latest salmon swim
```
I get
```
Version Info: Could not resolve upgrade i…