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I was looking at the file tf_interpro.txt because I was trying to generate the annotation table manually, and I noticed IPR004827 was repeated twice in this list. This could be inflating the number of…
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### Setup
I am reporting a problem with Biopython version 1.81, Python version 3.10.4, and operating
system as follows:
```python
sys.version = 3.10.4 (tags/v3.10.4:9d38120, Mar 23 2022, 23:1…
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I **created a separated issue from #2277 @ryhisner superlative comment and analysis** , Worth to be kept as an issue until confirmation of its findings. @corneliusroemer please don't close this one. …
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Dear all,
The proposal has been made to obsolete GO:0036369 transcription factor catabolic process
This is not a specific pathway, to be replaced by the parent GO:0043161 proteasome-mediated u…
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In addition to the issue raised by @yansongtongji in issue #53 ,
Here I am adding the script from where i got the same error for reference.
```
library(Seurat)
library(tidyverse)
library(cowplo…
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Thanks for creating the KOGMWU package. Not sure if this is the best venue to post a question, but I'm running into the following error about differing rows when doing a KOGMWU analysis:
```
kog.m…
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Hi
Mecp2 does bind DNA but it is not considered to be a DNA-binding transcription factor because the binding is not specific enough for this to 'provide a genomic address' which ensures specific ge…
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Or obsolete, depending on whether annotations are consistent
134 EXP annotations -> need to be reviewed
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Hi,
I have a script that uses multithreading, but the scripts cannot recgonize snakemake and caused an error "NameError: name 'snakemake' is not defined" when running with Snakemake. Not sure it was …
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\----- Original Message -----
From: "Alan Ruttenberg" <alanruttenberg@gmail.com>
To: "Bjoern Peters" <bpeters@liai.org>, "Melanie Courtot" <mcourtot@gmail.com>
Sent: Saturday,…