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**Issue by [yy418096798](https://github.com/yy418096798)**
_Tue Jul 30 02:41:09 2019_
_Originally opened as https://github.com/codelucas/newspaper/issues/712_
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When grabbing this https://www.wy…
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I am working on this pangenome database idea at https://github.com/ctb/2022-database-covers/. I may have found an error in the taxonomic classification while trying to figure some stuff out with the s…
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Hi everyone,
I am still getting the issue below when trying to build the bacteria kraken database from NCBI.
rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.g…
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Hi :)
A user on image.sc reached out to me to ask about using the CellProfiler with RunCellpose docker image. They report:
> I tried the Docker method again, it seems to work with the pre-trai…
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Running into a strange bug. I'm querying some various bacterial taxa, and a handful of my taxa have conflicting genus names in the database, e.g. _Rhocococcus_.
I attempted to resolve this …
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The chart I want to create in a Javascript file looks something like this:
```
var data = [ ['id', 'childLabel', 'parent', 'size', {role: 'style'}] ,
[0, 'cats', -1, 1, 'gre…
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Hi,
I created a phyloseq object by importing a QIIME-1.9 - generated biom file along with a metadata file. I am able to run most of what is on the tutorial, but when I try to subset_taxa (see code be…
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Hi,
I am trying to parse my phyloseq object to a taxmap object but I cant get it to work properly. The parsing seems to work fine (No error message) but when I look at the taxmap object it looks li…
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We are trying to install and run prokka in our Linux system but we have plenty of errors. After solving some problems with conda and perl versions we get this error message:
Could not run command: …
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I share this issue in earnest:
Your YouTube Python tutorials are superb, and I am (almost) thoroughly enjoying them... except for a couple of things that have nothing to do with Python. One of the …