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Hey Rico,
When downloading, installing, and running the main redun pipeline, one gets this error message:
Error message
```
[redun] Execution duration: 0.84 seconds
[redun] *** Execution …
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Hi!
I'm doing a smalle trial for my experiment where I'm currently running 5000 SILAC DDA raw files through the different modules of fragpipe. MSfragger took about 48hrs to finish for all files (r…
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Hello,
I am trying to estimate transcript abundance from a transcriptome generated from paired-end RNA-seq data using Trinity. However, I am running into a consistent error while using the transcri…
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https://mp.weixin.qq.com/s/06vTntlUwpaR-oxFvS0seA
ixxmu updated
10 months ago
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When running jobs on AWS Batch via Nextflow tower and there are spaces in the file names, the workflow finds the files and runs successfully. However, when I try to resume the workflow, it is unable t…
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Hi,
I try to migrate my pipeline to a HPC/SLURM cluster, but the medaka polishing step produces a error.
"samtools sort: couldn't allocate memory for bam_mem
Alignment pipeline failed.
Failed …
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Following new members will be introduced to different teams via email, hence, we are collecting their bio that could be sent around:
- [x] Vicky Hellon
- [x] Achintya Rao
- [x] Arron Lacey
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# Discussion
This is a big one.
### Current state
At the moment, MutiQC is written and distributed as a single Python package. The code is structured with a core library then extensible plugi…
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Hi @hasindu2008,
This is an atypical use case but I was curious to see whether conversion between FAST5 and SLOW5 is truly lossless. The plan was to compare the MD5SUM of FAST5s with and without co…