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Hi, I seached metagomic raw data from ncbi and found some sra labeled with RNA metagenomics. So I wonder if those data can be used with this tool?
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Thanks for this great tool, I've been using it frequently to pull data from repositories.
However, since today kingfisher is not resolving ena-ftp downloads correctly anymore for some reason. I'm u…
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If I remember correctly, we agreed that experimental protocols using
* internal barcoding (i.e. not resolved by the sequencer) that is used for
* multiplexing at or above the cell level (i.e. not UM…
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When specifying a input path, the path given to multiple steps of your script is only the filename which break the code cause it cant find the file in the adapt_find dir
[Errno 2] No such file or dir…
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Grandeur finished with errors (see attached): 1.) ValueError - only 1 label for 39 samples; 2). snp matrices were all 0's.
[End of Grandeur TB nextflow log.txt](https://github.com/UPHL-BioNGS/Gran…
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### Description of the bug
```
The exit status of the task that caused the workflow execution to fail was: 1
Error executing process > 'NFCORE_FETCHNGS:SRA:SRA_FASTQ_SRATOOLS:SRATOOLS_PREFETCH …
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### Data Owner Name
FileDrive Labs
### Data Owner Country/Region
China
### Data Owner Industry
Life Science / Healthcare
### Website
https://filedrive.io/
### Social Media
`…
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### Project short name:
ReconstituitionHumanThymus
### Primary Wrangler:
Ami
### Secondary Wrangler:
### Associated files
* Google Drive:
[folder](https://drive.google.com/drive/folders/10aZNwCg…
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**Describe the bug**
Using "from pysradb.sraweb import SRAweb" in python (command line error as well)
When one sample's sra_url is missing, a none interpretable error is produce:
`
File ".../pyth…
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Hello, I am new to sra-tools and getting data in general, and I seem to be facing an SSL connection error when trying to use fastq-dump.
I am getting error messages when trying to access data from …