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Hello @Yu-AnChen!
I produced some amazing registrations with PALOM!
Unfortunately, I have encountered and error for big images which I think is due to the size of these images.
Is there I size …
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**Describe the bug**
Trying to load OME-TIFFs into Avivator, or using the `loadOmeTiff` function, leads to errors.
This is console output from the current Avivator website when loading an image …
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I'm using the mu_dev_E15_012.ome.tiff file from the Spatial Organ Atlas. I noticed this with other SOA mouse dev images, too. When I adjust the intensity values and then recolor and showImage again, t…
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https://github.com/PolusAI/bfio/blob/75c588d60cec3cdfc0a24886acd90c89a0703be6/bfio/backends.py#L463 attempts to set self.index of tifffile.TiffFrame but new versions of tifffile.TiffFrame has the @fin…
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We should read the pixel size (OME `Pixels.PhysicalSizeX` and `...Y`) from the input ome-tiff and place it in an editable field on the Sample Info tab. This should be presented as pixel size in micron…
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We have extremely basic Zarr support but we want:
- [ome Zarr](https://ome-zarr.readthedocs.io/en/stable/)
- Whatever kind of TIFF layout is used by Vizgen
Others?
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The package has been developed to offer a seamless Java and Python interface. While I appreciate its usefulness for my ongoing projects, which are in C++, I would like to leverage the OME-bioformats t…
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I use the bioformat API to convert JPG to tiff. It is found that the converted TIFF file (pyramid) cannot be opened with openslide. Only tile TIFF is supported
```java
ImageConverter converter = ne…
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**Describe the bug**
Getting "undefined" error after hitting upload button on website.
**To Reproduce**
Steps to reproduce the behavior:
Upload by drag and drop or by choosing file.
Choose an…
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In [`8db4024`](https://github.com/BioImage-Archive/upptime/commit/8db402412b884ffe0432cce02383cf0c71086a43
), S-BIAD531-TFER-HTTP (https://ftp.ebi.ac.uk/biostudies/fire/S-BIAD/531/S-BIAD531/Files/Zebr…