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Defining mutations:
KP.2 > Orf1a:P1803L (C5673T = PLPro_P240L) > C14220T > S:I934V (A24362G) > T931A, G8872A, S:N30K (T21652G)
Query: T931A,C5673T,G8872A
Samples: 7 ( 6 on Gisaid)
Countries: C…
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Hi tfold team,
I applied tFold-ag to the AbDB dataset, and while it performs well on some proteins, I encountered difficulties predicting other proteins. Upon inspecting the predicted structures, …
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**Problem statement**
We received an updated LIVD to the Reportstream inbox. The LIVD table needs to be uploaded into ReportStream.
**What you need to know**
[LIVD-SARS-CoV-2-2024-08-29 PRIME.xlsx](h…
rnz6 updated
2 months ago
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I had recently did a Nanopore sequencing run for SARS-CoV-2 in MinION with midnight primers 1200 bp amplicons (Nikki Freed protocol) and native barcoding kit (EXP-NBD96). I have earlier used EPI2ME pi…
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Attach file of profiling.
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**Is your feature request related to a problem? Please describe.**
[Pokay](https://github.com/nodrogluap/pokay/tree/master) has been updated to host other priority pathogens in addition to SARS-CoV-2…
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From branch 4 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1768
KP.2+C5673T(Orf1a:P1803L)+C14220T+C3619T, C18657T,G23236T, C26936T, del21656_21658(S:K558N, F32del)
GISAID q…
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It seems that there is JN.1.1.5+S:F456L(T22928C)) branch misplaced as JN.1.1.6+S:R346T+C9142T.
Note this branch is different from KR.1 as it doesn't have Orf9b:T72I.
And this branch now has a S:T57…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/2128
This went unnoticed ( or we confounded it with KP.4.1.3) maybe due the fact Usher puts it under S:S31F but inst…
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The number stays at 148 for 2 days while the actual numbers should be more like :
03/17/2020 => 175
03/18/2020 => 264