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Is it possible to specify the `-x` option to allow for running paired-end data with the UMI on read 2, but no cell barcode? The strandedness would be `--rf-stranded` as well.
Reads look like:
Re…
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Hello
When I use `molecularData()`, I find `entrezGeneIds` is necessary. Like
```
test
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https://mp.weixin.qq.com/s/p4_jwC0RYeFRbfdoPA4NdA
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Like #1, another way of checking the gene expression variability is by using some statistical model and estimating the percent of variance explained by different terms for each gene.
One way of doi…
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https://mp.weixin.qq.com/s/7eFRZNhBntBeiKwhDLDqAQ
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**Dataset/group this task is for:**
**[ingest](https://contribute.data.humancellatlas.org/projects/detail?uuid=005d611a-14d5-4fbf-846e-571a1f874f70)**
**New 2nd submission:** https://docs.google.com/…
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Hi Alex,
I was wondering if it's possible to use EM multimapper counting in case of protocols like Smart-seq2, and for bulk RNA-seq.
Thank you, as always.
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Hi, I would like to know if that is possible to use Compass with Bulk RNA-seq and not single cell only ?
Thanks,
Gepmat
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https://mp.weixin.qq.com/s/-UjKxtszsH7HxRe3Rjh7zg
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https://mp.weixin.qq.com/s/5QSOaHvz__xoMBRuljKuSg