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I am unable to build a database that contains /pseudo genes, although the `prokka-genbank_to_fasta_db` function has a pseudo gene option
`--pseudo! Include /pseudo `
I am calling
`prokka-g…
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User report:
I wanted to get functional annotation of variants identified in earlier steps of my analysis. I thought of using Funcotator for this purpose. Interestingly, the annotation differed from t…
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### Context
The glycoprotein complex (GPC) is the only surface protein of the Lassa virus (LASV) and plays a crucial role in mediating entry into host cells. It is also a primary target for neutr…
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Hi there!
I've been looking at translating protein-vs-protein or HMM-vs-protein alignments to genome coordinates in GFF format for easy browsing by colleagues and gene curation.
But it's unclear t…
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Hi,
I ran HiSat2, MarkDuplicate, removed reads with the lower quality score than 40 and finally only kept properly paired reads. Scallop/StringTie and TransDecoder could predict UTRs but unfortunatel…
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Hey,
I just found your tool, and I really like it. However, I mostly work with the Ensembl fasta files and they are not out of the box compatible with the GENCODE `gtf`s due to the missing `'chr'` …
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Hi
How FATE decide the biotype of each hit?
I could not find the description of the criteria for "blue/yellow/red" in the 9th column.
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Hi,
First, i deeply appreciate you for the powerful tool. But, I found many dots existed in amino acid sequences when I used the liftoff. Is It mean that a pseudo-genes ?
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the `
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Hello! Thank you for the package.
In the sp.List, there are 2600 plant species included. However, I have noticed that in the phylogenetic tree generated in scenario3, only 2595 species are being in…