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Dear @bsipos,
I'd like to clarify about the options which are provided in cluster_gff.
Would these 2 options below be referring to the number of bases in each information?
> -d int : Exon bou…
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It seems that the contrastive loss in the moist_siamese_graph.py is defined as
```
K.mean(y_true * K.square(y_pred) +
(1 - y_true) * K.square(K.maximum(margin - y_pred, 0)))
```…
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Hi,
I read the msCRUSH paper and I am interested in using this software. So, I downloaded and compile the code, according to the instructions. However, when I run the `generate_consensus_spectrum_…
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Hi @HajkD,
I keep getting this error in the filtering step just before usearch clustering.
Which file is failing to be parsed at this stage?
```
Input: /disk2/nguinkal/Zander_Project/pipelines/L…
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Hi,
I tried to run a comparison of two PHAST prediction regions with prodigal and vsearch and there is nothing in the consensus file, but if I use usearch there is. vsearch is in the path and runs, b…
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Refer to test3_data. Run it a few times and you see clustering results change
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**Description**
The cluster for zeebe is not working well for me. I am getting "Error: rpc error: code = DeadlineExceeded desc = context deadline exceeded" error all the time. This exact same issue "…
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It has become apparent that the grader needs improvements.
Goals we are trying to achieve are as follows:
- PegNet prices should reflect as close to the "right" price as possible, this includes e…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/bioinformatist/CrossICC
Confirm the following by …
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I've been having a *very* weird issue with my `ipyrad` analysis: Specifically Step3.
Some of the samples are not finishing the clustering.
`ipyrad` claims Step3 is finished and moves to Step 4, ho…