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Hello! Really great tool. For me, the hive plot function appears to be very useful. But I encountered with an issue when aligned sequences as you have described in your decumentation. I did it this wa…
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Hi @GMOD team,
The fields of epigenetics and now epitranscriptomics have evolved very fast in recent years and there are now a few DNA and RNA modifications which can be detected at single molecule…
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Hi, the samtools flagstat does not seem to work for me. I get the following error, the 'quickcheck' gives a good report. Does anyone point me to what might have gone wrong.
```
$ samtools flagstat F…
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I used Arioc to map reads to my reference genome twice but both sam files has erroneous characters generated and it cause samtools view to abort with error `[W::sam_read1] Parse error at line 2602870`…
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Hi,
I am excited to be using the new gatk4 workflow on a fresh bcbio development install. In this case I'm running a tumor/normal pair of targeted DNA-Seq from pre-aligned bam files. I've read mixe…
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Hello Maria,
We are trying to use Ribbons for data analysis of viral integrations into the human genome sequence. Unfortunately, we have encountered an issue with one step of the analysis. Specifi…
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Hi!
I'm trying to analyze some quantification data generated using bowtie2 for the alignment and RSEM for the quantification of the transcripts, but I get an error that I cannot figure out how to s…
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### Description of the bug
Pipeline completed successfully, but the output multiqc fold is empty.
**All multiqc results can be find in work directory (ea/2dc26c).**
### Command used and termi…
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### Description of the bug
Hello,
I am running into an error using the latest nf-core/rnaseq pipeline with test-data from the test-datasets repository. Below is an reproducible example:
### Comma…
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Hi Jean-Philippe,
thanks for this great R package.
I would like to use crisprVerse package to design gRNAs in plant species and speed up the CRISPR construct design.
I have tested the packa…