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### Operating System
CentOS 7
### Other Linux
_No response_
### Workflow Version
1.0.0
### Workflow Execution
EPI2ME Desktop application
### EPI2ME Version
_No response_
### CLI command run
…
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I am new to this method of genome assembly, so I am struggling a little with installing Canu.
I think I should use the following command (but I am not sure):
`curl -L https://github.com/marbl/can…
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### What tool are you looking for and why?
https://github.com/HKU-BAL/Clair3
variant caller for nanopore data. They provide a dockerfile and pre-built images on dockerhub but may be useful to add …
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Hi,
I first use the transcriptclean to correct the nanopore dRNA reads generating the bam file. Should I set the data type parameter as transcript or Nanopore ?
Thanks a lot,
Bai
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I attempted to use the tool with the BAM file generated from demo data and encountered an error. Could you kindly provide assistance with this?
```
(venv) (base) kamada@Lalithas-MacBook-Pro Nano…
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
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Hello,
I working through the DeepVariant set up workflow under the docker umbrella, but the variable "ref" indicating the path of the reference .fasta is not responding properly.
sudo docker r…
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### Operating System
Other Linux (please specify below)
### Other Linux
Ubuntu 20.04.6 LTS
### Workflow Version
v1.0.0
### Workflow Execution
Command line
### EPI2ME Version
_No response_
##…
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Dear Brendan,
I know that you were considering something else in terms of making a long-read model, but I wanted to try and make a model and classifier based on [these CRAM files](https://github.co…
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Hi,
it happened to me that `overlapInCorePartition` generated too many partitions and a 67GB large `correction/1-overlapper/overlap.sh` shellscript, practically just huge if/else code which a call …