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Hi all!
I am getting a 'No objects to concatenate' error when trying to use the pipeline. I have already checked the zipped .mcd-files and the panel-.csv-file multiple times and also the directories …
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Hi MCMICRO team
I'm trying to use ASHLAR to stitch and merge my whole-slide images generated by CellDIVE.
The structure of my files looks like this
--raw
--S001_bkgnd_dapi_bkgnd_fitc_bkgnd_cy…
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### Describe the issue:
After pip installing Suite2p in a Jupyter notebook on a windows machine, I got an error when running `import suite2p`. The dependency sbxreader is not found. Pip installing …
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Issue was raised on forum thread https://forum.image.sc/t/issues-with-ndpi-wsi-conversion-to-ome-tiff-concerning-kheops-qupath-ome-types/69862/8 and could be reproduced with the provided sample file a…
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Dear all,
I am using bioformats2raw and raw2ometiff (latest versions installed with conda) to convert fluorescence image, coming from a 3Dhistech slides scanner, in .mrxs format.
`bioformats2ra…
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## Use Case
We would like to export packing images as `*.tiff` files for using them in other analyses. See [here](https://github.com/allen-cell-animated/feedback-research-repository/issues/88) for mo…
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Hi,
I have generated an OME-TIFF using the following command:
```sh
bfconvert -tilex 512 -tiley 512 -pyramid-resolutions 6 -pyramid-scale 2 -compression LZW my_image.tiff my_image.ome.tif
```
…
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Hi all,
using the latest version I can't upload zarr data because an `IsADirectoryError` exception is raised. See below.
```
2023-06-30T17:19:50+0200 [INFO ] dandi 3077715:140494520747…
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Hi,
I have a large(>8000 files) set of images width known grid size and fixed title size. I "just" need to stitch them together without any overlap calculations. Is that possible somehow?
Thank …
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Hi,
Using tifffile and ome-type, I construct a OME-TIFF containing, among other things, an XMLAnnotation.
The part of my code where I make the annotation looks like this :
```
xml_ann = ome_type…