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The query APIs can be accessed using `from spatialdata import bounding_box_query` and using `sdata.query.bounding_box`.
These two functions are identical, and the second is just a convenience. For …
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A lot of computing will be GPU accelerated in the near and distant future. ScanPy is no exception as was recently demonstrated by NVIDIA. We got a nice PR (https://github.com/theislab/scanpy/pull/1533…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [ ] (optio…
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It would be very cool to somehow do dynamic streamline plots. See
https://github.com/theislab/scvelo/assets/43999641/334d0577-5c14-4b8f-9416-9bd19850b787
for an example from geospatial data. …
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Hi @grst!
I think it is not clear from the [API documentation of the HammingDistanceCalculator](https://scirpy.scverse.org/en/latest/generated/scirpy.ir_dist.metrics.HammingDistanceCalculator.html#…
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When I start a training script with multiple GPUs, I get:
```
File "/home/user/micromamba/lib/python3.10/site-packages/cellarium/ml/utilities/data.py", line 194, in categories_to_codes
AttributeE…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (op…
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**Describe the issue**:
Since the latest update, importing dask.dataframe changes pandas settings so arrays retrieved from a dataframe are no longer writable.
Ideally, importing dask.datafra…
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Hi @LucaMarconato @melonora ! My spatialdata is CODEX data, and I want to get the table from the input polygon using `polygon_query()`, but the function does not return the table.
Here is my code:
…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (option…