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As-is, the run.py will look for T1 images with "ses-" in the filename, but the directory structure is still:
`BIDS/sub-#/anat/sub-#_ses-#` rather than
`BIDS/sub-#/ses-#/sub-#_ses-#`
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@rwblair has been working on using the new YAML files in the specification to build regular expressions to replace those currently in place in `bids-validator`. These regular expressions should also b…
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Currently, we're parsing BIDS-structured datasets ourselves (e.g. we manually check paths for `sub-` and `ses-` prefixes, etc.)
https://github.com/spinalcordtoolbox/spinalcordtoolbox/blob/956d61e8a…
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# Snakebids: Reproducible neuroimaging workflows as BIDS apps
***By Tristan Kuehn, Jason Kai, and Ali Khan, Western University***
### Preferred sessions: Emergent Session #2 or Emergent Session #5…
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Add to `tests/data`:
- [ ] example_no_session.tsv
- [ ] example_no_session.json
The above files should correspond to one of the `bids-examples`. Options include `ds001` and `eeg_ds000117`.
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**talk 1: Intro to FAIR**
exercise: 16 attributes of FAIR - e.g. Is there a clear license, what is a PID, What is meant by metadata, …
link attributes for 2 modules below
**talk 2: Standardizat…
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copying to this public issue from a private chat:
> wouldn't it be fairly easy to supply the web-validator as both `stable` (as done currently), AND `dev`? We can just have two folders on the `gh-p…
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### Summary
I generate a model from a bids event file. The events are named li, limr, re, remr
### Actual behavior
In the bunch file the event li is containing the li events, but in addition the …
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## Summary
I am receiving the following error from dwibiascorrect when the lowest bvals are not 0, but below the b0 threshold:
```
dwiextract in.mif - -bzero | mrmath - mean mean_bzero.mif -axis …
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I am trying to add a rule file to be used in the bids conversion. When I do that with a installed test dataset recreating the spec files does not work:
```console
$ datalad create -c bids bids
$ …