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I have another question:
I have 3 UIDD and I want to download the expression data. How can do this task?
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Hi,
I am processing RNAseq data with bcbio 1.0.8.
```
The yaml that I used is:
# Template for RNA-seq using Illumina prepared samples
---
details:
- analysis: RNA-seq
genome_build:…
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Update2: Might be actual. Other tools show this symptom.
**Tool**
toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.1.8.3
**Error**
> Fatal error: An undefined error occured, please check your intp…
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Hi all,
I installed the latest version of FALCON with your instructions, on my CENTOS server. I created a new conda environment and I used this conda to install FALCON with the command : _conda ins…
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Here I report th error
```
[WARNING] multiqc : MultiQC Version v1.4 now available!
[INFO ] multiqc : This is MultiQC v0.9.dev0
[INFO ] multiqc : Template : default
…
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When tested, the read_analysis.py step outputs the following message after minimap2 alignment:
```
2018-06-26 02:00:48: Read pre-process and unaligned reads analysis
2018-06-26 02:01:23: Alignment …
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Hi, I am new to TCGAbiolinks.
When I try the following code in the TCGAbiolinks help documents, the GDCprepare always gives me the error message (Error in gene.location$ensembl_gene_id : $ operato…
ghost updated
6 years ago
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Sometimes during build, the sources are corrupted or not properly downloaded. In order to mitigate this issue we can perform an md5sum check on the downloaded sources.
As a first step I am attaching …
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There are several options that we can change in STAR, bowtie, or HTseq. (I assume these packages are used in celseq2 pipeline)
Is there a way to change the default option values in the pipeline?
A…
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As part of our efforts to create the Ontology for RNA Sequencing (ORNASEQ), we request various terms be considered for addition to OBI. These new terms would ultimately be imported into ORNASEQ. The p…