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**Have you checked the FAQ? https://github.com/google/deepvariant/blob/r1.6/docs/FAQ.md**:
Yes
**Describe the issue:**
DeepTrio v1.6 crashes reproducibly with a segmentation fault
**Setup**
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## Describe the bug
The conditional required field `library_strandedness` for RNA-Seq data is NOT enforced in the schema.
## Steps To Reproduce
POG-CA has started submitting RNA-Seq however c…
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Hi,
I am trying to test running hisat-genotype with some of my Illumina Whole Genome Seuquencing data.
I slightly modified the setup script (described [here](https://github.com/cwarden45/DTC_Scr…
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### Project short name:
MultipleMyelomaCoevolution
### Primary Wrangler: @idazucchi
### Secondary Wrangler:
@ipediez
### Associated files
* Google Drive: https://drive.google.com/drive/fold…
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Dear developers,
I'm facing issues in applying umi_tools dedup on a bam alignment. I'm using data from a Takara SMARTer Stranded Total RNA-Seq Kit v3 library, so the UMI sequences are present only o…
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## Checklist before submitting the issue:
- [x] The issue is strongly related to the MiXCR software
- [x] The issue can be reproduced with [the most recent version](https://github.com/milaborato…
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Hi, I'm a newbie in dada2 pipeline,
my samples are from Illumina Miseq 100, 16S V3 in casava single end so no merging is required,
my samples are 16S V3 in casava single end so no merging is requir…
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- cutadapt 4.2 with Python 3.10.10
- installed with conda
- using parameters -g -G -a -A
My use case is that I have transposon insertions as paired-end reads that I'd like trimmed from 5' and 3' …
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Hello! [This is the paper I am using](https://onlinelibrary.wiley.com/doi/10.1002/edn3.374) to mimic the Nanopore process - this is the most clear of the 3 I was cobbling together. It looks like I sho…
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Hi Kamil,
First of all, thanks for developing on such a great tool.
I've been trying to run Smudgeplot on a coral genome. The species (_Tubastraea tagusensis_) was assumed to be diploid accord…