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Should short reads from metagenomic data be mapped to those genes (or protein) (>90% identity for blastx or diamond blastx for example) that were found in the database to calculate relative abundance…
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Thanks to the authors for their great work.
I would like to ask about the ncRPI task, how was the 16658 data in the training set and the 4166 data in the test set constructed? I can't match that nu…
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使用作者提供的脚本和数据训练蛋白小分子复合体模型，发现内存随着epoch逐渐增加，最后超出机器上限，请问大家有没有一样的问题，是怎么解决的
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Hi!
I am trying to use Platon 1.6 installed with BioConda to identify plasmid contigs. By running the following command:
platon contigs.fasta --db ~/Databases/db --output platon_accu --mode accura…
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When I run speedppi with Uniref_30 database, I get the following warning
```
- 23:11:17.538 WARNING: Warning in /big/martin/hh-suite/src/hhalignment.cpp:3518: MergeMasterSlave:
- 23:11:17.538 WAR…
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I'm using the latest Funnanotate, but when I reach the "funannotate predict" step I get this:
```
augustus: ERROR
PP::Profile: Error parsing pattern file"/sw/anaconda/2019.10/envs/funanno…
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@sagnikbanerjee15
I found that in the final output, many genes are located in repeat regions.
It seems the soft masking of the genome doesn't work well.
Got any idea?
Thanks
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Dear Developers,
We are trying to perform a BUSCO analysis in our assembly on a CentOS7 computer. While the Quast analysis is running successfully, we get 100% missing BUSCOs, even if we try the as…
ghost updated
4 years ago
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While setting up the CLIF 2.0 labs table, @08wparker and I would like to propose the following updates:
1. **Add New Labs**: Incorporate the following labs into the `lab_category`: `RDW`, `Beta-hyd…
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Hi @brianjohnhaas
I have some doubts about EVM and also some execution problems. I was wondering if you could help me. I would be extremely grateful to you if you could help me solve these doubts …