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Bowtie2 is able to find many alignments for very short sequences (10-30bp). Hisat2 is not able to reproduce alignment behavior from bowtie2.
```bash
bowtie2 -p 60 --norc --ignore-quals --mp 1,0.5 …
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Hi,
The wiki page on importing from Cactus (https://github.com/vgteam/vg/wiki/Importing-Cactus-Alignments-into-vg) refers to a yeast data set that was used in the manuscript (?), but the link includ…
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To avoid an uncoverable statement, I need to provide an alignment having different length of sequences.
Maybe that we be solved never
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Can u share a tool to convert alignments from the below raw files created with mfa?
File type = "ooTextFile"
Object class = "TextGrid"
xmin = 0.0
xmax = 11.89775
tiers?
size = 2
item []:…
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Hello everyone,
I am runing star-cufflinks-rsem to analyse my transnomic sequencing data, everything is all right until I turn to use rsem to calculate the gene expression.
The RSEM gives me an err…
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**Describe the bug**
Currently, the nav elements are not aligned correctly in the mobile view.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to 'https://dev.sefglobal.org'
4. See erro…
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Modify the control panel by rearranging the page controls, width and alignments
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Migrated from https://redmine.open-bio.org/issues/2929 filed by Miguel, on 2009-10-15, in reference to the table parser issue now logged as #1721.
> With the problems encountered while parsing plai…
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Hi,
Im using Rstudio server from a docker image (rocker/rstudio), im trying to run the first example code inside de package help page, but im getting the following error:
``Error in plot.window(..…
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To improve appropriate use, some safety catches should be put in place to deal with poor primer alignments that lead to wonky trimming. This is specific to cases when primers are input, not positions.…