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Hi everyone :).
I just downloaded the latest version of Interproscan, 5.26-65.0 , and it seems that the ncbi-blast-2.6.0+/rpsblast is not working.
The system throws the following error during exec…
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@meren, right now this is only useful for MetagenomeCentricGeneClassifier, but maybe in the future some other class would access this. Should this function be transferred to dbops?
https://github.c…
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Currently `anvi-interactive` (and `anvi-display-pan`) allows the user to add additional layers of information into the display per item through the `--additional-layers` flag.
The advantage of this…
meren updated
6 years ago
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I was trying to install libtorrent-rasterbar. I've successfully installed it before, not sure why it doesn't work now.
The exact copy-paste from command to error on Terminal:
```
$ brew install l…
ghost updated
6 years ago
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The following directories need to be renamed
- [ ] `bin` -> `binning`
- [ ] `mash` -> `distance`
- [ ] `anvio` -> `visualization`
- [ ] `tax` -> `taxonomy`
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I should have done this under #610, but I failed, so here are some suggestions :)
First of all, thank you for this, Alon. I think this will help everyone to do more systematical searches for genomi…
meren updated
6 years ago
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Hi,
I'm using Anvi'o ver. 3. I experienced unexpected behaviors in the program, anvi-rename-bins.
I tried to define metagenomic bins with >70% completion and >2 Mbp in length as MAGs and rename t…
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@meren, if I understand this correctly then `median_absolute_deviation` will only be zero for a uniform distribution, but why did you choose to define the entire vector as all outliers?
Were you mayb…
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When using this command: `anvi-display-pan -p AB16-PAN.db -s AB16-SAMPLES.db -g baumannii-16-GENOMES.h5` I get the following error:
```
Traceback (most recent call last):
File "/usr/local/bin/a…
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Hi team anvio!
Greetings from New Zealand. I understand that anvi'o is more for working with co-assembly and binning contigs. However, I'm wondering if **there's a way to export functions (e.g. COG…