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Hello!
I tested fdogs.run with some sequences and it seems to me that error messages are displayed a little incorrectly.
Below I will give the errors that I encountered so that it would be more co…
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New ortholog (version 19 is made)
https://sourceforge.net/p/pombase/curation-tasks/208/
All of the genes which are tandem fusions, or map to a tandem fusion are annotated thus:
/controlled_curation=…
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Currently this term is only under 'cysteine-type peptidase activity':
peptidase activity
|__peptidase activity, acting on L-amino acid peptides
|__cysteine-type peptidase activity
|_…
sjm41 updated
2 years ago
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Hi,
I want to find exon orthologs from two non-model organisms, and I want to use the annotation made by my lab. So I need to start the preprocess at step2, which folder I need to put the data and t…
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`prepare_quantile_groups` now runs `EWCE::standardise_ctd` which in turn uses `orthogene` to convert non-human orthologs to human orthologs.
For now, `MAGMA_Celltyping` will only convert from non-…
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Enable this search as an option under
orthologs and conservation
-taxonomic conservation
(we have the information so we might as well add to this list)
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There are a few curated orthologs to cerevisiae genes that aren't in the sequenced strain. We don't get the identifiers for them from Ensembl/BioMart so we'll need to load them separately.
Original …
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Hello,
I have id'ed orthologs between my two finch species assembles using
```
res NP_001041718.1
aaseqhere
>XP_021405980.1
aaseqhere
```
for example
Thank you!
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Hi, I'm having some problems to install aTRAM with respect to modules biopython, numpy and psutil. util_check_requirements.py says these modules are missing, but I can see they are installed through p…
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Hello CellPhoneDB,
Thanks for developing this amazing package.
We're wondering whether it's reasonable to use it for mouse data. If so, we can transfer mouse gene names of our data into human's and …