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I'm not really sure that this is an eDNAFlow problem, but I noticed today that in one of my datasets (starting with --demuxed-fasta) I am getting several zOTUs that don't show up in the main zOTU tabl…
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The issue #433 has received request (from @johannesbjork) to add robust matrix completion in the robust CLR (rclr) method in the _vegan::decostand_ function, following the procedure in [Martino et al.…
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Hi.
I have a problem with the path to the fastq.gz files apparently not existing. Of course it is created and fastq.gz has 'barcode' in its name. I run Metontiime from WSL (ubuntu). I did not make an…
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We appear to have an unsolved problem with assemblies that have multiple Covs.
From @rchikhi in an earlier issue: "Among the 10,816 datasets of the master table, 272 (2.4%) of them have CoV contigs…
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Hi,Chi
when I use the microeco package,It came up with this error：
No same sample name found between rownames of sample_table and colnames of otu_table! Please first check whether the rownames of sa…
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Hi @RRShieldsCutler,
Thanks for a great package! I am following the tutorial on my 16S data. But I was a bit confused about the structure of the OTU table. Could you please confirm if the input OTU…
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Hi, I am trying to run your package using my phyloseq object, however even when I run your example phyloseq obj dummy.ps to run this step:
mbec.obj
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Hello,
I have the output file from analysis of 16s dataset, picrust2 plagin was used in qiime2, then I have converted the biom file to tsv format. Now I am trying to visualise results, I have some is…
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Hello and thanks for this tool. Recently I applied the BEExact database to a dataset from an EFB outbreak. The number one OTU came up as:
Bacteria(100);Firmicutes(100);Bacilli(100);Lactobacillale…
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Dear Mothur Team,
I am currently working on an analysis using Mothur v1.48.0 and would greatly appreciate your assistance with a few questions I've encountered.
Background: I am amplifying the V…