-
Hello, I encountered this error while running CeleScope.
Exiting because of *FATAL ERROR*: could not create FIFO file .//SMA/01.starsolo/SMA__STARtmp/tmp.fifo.read1
SOLUTION: check the if run direc…
-
Hello,
Executed code:
shapemapper --name example --target ../FASTA/RNA.fasta --out RNA_shapemap --amplicon --modified --R1 100mM_1M7_RNA_R1.fastq --R2 100mM_1M7_RNA_R2.fastq --untreated --R1 DM…
-
The file type fg.gz is very common for RNA sequencing data and it would be great to add (especially since I have a dataset with many of these files)
-
| User Interface | Source Code |
|:---:|:---:|
|![image](https://github.com/user-attachments/assets/ce7e3492-a327-43e7-947f-6050950e63d7)|![image](https://github.com/user-attachments/assets/9ebd8410…
-
#### What analysis module should be updated and why?
An incorrect matching here:
https://github.com/AlexsLemonade/OpenPBTA-analysis/blob/6bf301eea42a7f8812c3b14cee35a961097f8ecf/analyses/indepen…
-
### Context
In some cases, we have many but not all samples from a experiment completing. This makes it difficult for us to run tximport, particularly if the experiment is small (fewer than 20 samp…
-
The current supporting read count drops any read which only partially spans a variant sequence. This causes counts to fall very sharply with increasing variant sequence length. A smoother measure of R…
-
Hi, I really enjoy your package.
I downloaded TCGA RNAseq fpkm value and try to produce the IPS as follows
`FPKMtoTPM
-
Hi,
Our lab is trying to use short-reads and long-reads to identify non-colinear RNAs. The long-read dataset can help us to understand the lengths of non-colinear RNAs. I would like to ask whether…
-
- subClassOf OBI:0666666, RNA extraction
- has output (OBI:0002627, from #1036)