-
because the first question is closed, so I need to reopen it
This isssue related to #683
#
Thanks a lot for your kind and helpful suggestion.@nh13 @fleharty
1 I am doing somatic calling of p…
-
`remove_lcr` was deprecated in 2018: https://github.com/bcbio/bcbio-nextgen/commit/17d8bb0623888a55a0c1b7ba52f1dd0f9d4dc5b4 (see also: https://github.com/bcbio/bcbio-nextgen/issues/3267#issuecomment-6…
-
### Background
Balsamic version 8.2.1 is the latest release. Before deploying it to production, this newest release needs to be adequately tested with different analysis types for various [validati…
-
## Requirement
> The `Most Frequently Mutated Genes` graph on the top right is misleading in that includes `Histological Markers` as well. This was a concern for Daniela, and she wanted to get rid …
-
Right now it appears that the Downstream plugin doesn't output a predicted downstream sequence for `stop_lost` variants (or it is just a sequence of multiple `X`s). Is this the expected behavior? Woul…
-
Hi all, I noticed that for some variants HVAR values outputted by VEP (through `--everything`) and dbNSFP v4.1a are different, as example for a file annotated thorugh VEP v103 docker, with command:
`…
-
I've done GRIDSS, GRIPSS (both steps), COBALT, AMBER, and get an odd error when running purple. It seems to be trying to use my current directory as some type of input. Here's my syntax:
```
grid…
-
Hello Kez,
Exciting work you've put together here with dysgu. Very happy to have come across your preprint as I've been looking for a tool that would generate such useful read metrics for the major…
-
https://scout.scilifelab.se/cust127/GMSB-UP007
Checking old db:
```
clinicaldb:PRIMARY> db.case.find({_id:"toughwren"})
{ "_id" : "toughwren", "display_name" : "GMSB-UP007", "owner" : "cust127",…
-
This ticket tracks the whole discussion on how the data has been modelled and parsed to be part of our target-disease evidence data sources as of the 21.09 release.
I'm copying here all the comments …