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## Feature request
### Tool(s) or class(es) involved
GermlineCNVCaller / PostprocessGermlineCNVCalls
### Description
The VCF produced by the germline CNV calling workflow could be nicer. TBH …
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Dear developer(s),
I wonder if there is any chance to get a gds (or vcf) file once a snp dataset (with multiple samples inside) has been pruned. Unfortunately I am not an R expert but it seems snpg…
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```
As a one way automated copy feature, vcardio could autoimport all vcf
files in a certain predefind directory on start (or better -
periodically).
In conjuction with, for example, swiftp - ftp s…
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```
As a one way automated copy feature, vcardio could autoimport all vcf
files in a certain predefind directory on start (or better -
periodically).
In conjuction with, for example, swiftp - ftp s…
-
```
As a one way automated copy feature, vcardio could autoimport all vcf
files in a certain predefind directory on start (or better -
periodically).
In conjuction with, for example, swiftp - ftp s…
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Display a subtrack for each genotype present in a VCF store, similar to how IGV does it. Allows visually distinguishing patterns in genotype data.
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Hi there - I'm having some problems running `HaplotypeCallerSpark` on RNA-Seq data.
The tl;dr is that, on some occasions when `HaplotypeCallerSpark` runs out of memory, it finishes successfully, b…
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```##ALT=##INFO=```
```##FORMAT=##FORMAT=```
Missing newline
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Hi!
I miss an option to report all sites in VCF outupt, even the ones without genomic variants.
That would allow me to flag potentially non-informative sites, e.g. with low read depth. Application…
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After some discussion the bcf format is moving to a slightly modified vcf format (see https://github.com/MRCIEU/gwas_harmonisation/issues/15 for info)
I have made a new branch in this repository ca…