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I can successfully synchronize contacts with Zimbra using CardDAV with various other programs (CardDAVSync for Android, cadaver, webdav-sync), but vdirsyncer doesn't find any contacts.
Config (actual…
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Hi! I've searched inside the code the meaning of the different colours used on the repeats plotting, but I can't figure it out by my own (I'm still a beginner in this field...). In order to make a goo…
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I'm getting an error running a validation against a custom reference call set. Any ideas what might be wrong?
```
[2016-01-13T22:53Z] INFO 23:53:34,627 HelpFormatter - Date/Time: 2016/01/13 23:53:3…
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Hi Brad,
I noticed that a new software named "churchill" released for NGS data analysis, and it claimed that highest speed than other similar pipeline.
http://churchill.nchri.org/
So what's your op…
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The storage-mongodb was designed to store, at the beginning, all the samples information available on the VCF. For performance reasons, a really big compression was made by storing just the genotypes …
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We currently require that genotype likelihoods are _raw_ probabilities. However, many tools produce these likelihoods in other formats (e.g. as log-likelihoods). This feature will allow the specific…
rob-p updated
8 years ago
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Hi Brian,
I get an error when installing the devel version of vcfR. This is the session info:
``` r
> sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running unde…
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For the decision (BD) field, it is fairly obvious what TP/FP/FN mean, but it could be good to clarify the meaning of 'N' (and what the intended use is).
Am I right in assuming a 'N' is used to indic…
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I tried a couple comparisons on http://cycledash.demeter.hpc.mssm.edu/ and the table is showing incorrect values for True Positives
![compare1](https://cloud.githubusercontent.com/assets/5685044/95842…
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```
What steps will reproduce the problem?
1. Create a VCF file a.vcf with this line:
20 1711570 . T TG 59 PASS
DP=173;NF=0;NR=0;NRS=5;NFS=3;HP=1 GT:GQ 0/1:20
…