-
IN:05282509
For Young GPU pilot users.
Contains fork of AlphaFold2 without the local databases.
1.3.0 is current release.
https://github.com/YoshitakaMo/localcolabfold
License: MIT
Requ…
-
## Expected Behavior
Don't crash on envdb when sequence length is less than 12 aa long (for example on `SEGGQDFWL` or `GSSGLISMPRV`).
## Current Behavior
MMseqs2 process crashes on aligning…
-
Hi
I am having problem with ColabFold: AlphaFold2 w/ MMseqs2 BATCH
![image](https://user-images.githubusercontent.com/69394914/141667451-aa7716f7-ef3c-4eb7-ac4d-e80f842069bc.png)
I ran si…
-
Hi, I'm using alphafold2 to predict my protein structure. I found the result models always different no matter for x y z coordinates or plddt even I used the exactly same command line and didn't chang…
-
## Expected Behavior
I have successfully mounted my google drive and the batch ColaFold states using the Alphafold2 batch notebook at https://colab.research.google.com/github/sokrypton/ColabFold/blob…
-
Hello! I am running the alphafold2 (non-docker version; Miniconda) in a HPC platform (with Nvidia GPUs), predicting the structure of a protein with about 500 amino acid residues. I am sure that the ha…
-
**What is your question?**
I am planning to use ColabFold on a batch of sequences and am currently trialing the program on just 3 of my sequences (file name: test.fasta). When I run 'colabfold_batch …
-
Heyy,
I've already predicted several protein structures with Alphafold2.0 using a colab-notebook. But I have to predict around 100 protein structures and so I've heard about Omegafold wich can pred…
-
I'm trying to predict the protein structure of an antibody using AlphaFold, but I'm unsure how to specify the disulfide (SS) bonds to AlphaFold. While I can see the disulfide bonds in the Uniprot feat…
-
Hi,
Suppose I have a Peptide `IQGLSFDIYEALL `which I want to dock (create a heterocomplex?)
to a protein `QEEACAKNFGAFCVFVGIVRKEDN`
Is this syntax correct to run with [AlphaFold2_advanced](htt…