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tommaso.ricci@LI-017 MINGW64 ~
$ curl -sfL git.io/antibody | sh -s - -b .
getantibody/antibody crit uname_os_check 'MINGW64_NT-10.0-19042' got converted to 'mingw64_nt-10.0-19042' which is not a GOO…
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The mine pluralizes words like this:
antibodys
fishs
instead of this:
antibodies
fish
Can this be configured?
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Hi Annika,
The Antibody (https://pulsar-encode.herokuapp.com/antibodies/24) for cs-312 https://pulsar-encode.herokuapp.com/chipseq_experiments/312 has not been registered on the portal.
Could yo…
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Thank you for this great work. I learned a lot of insights of alphafold from openfold paper.
I am predicting antibody-antigen complex. In my case, I already know the structure of Ab-Ag complex, …
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It would be handy to pass a metadata argument (individual dictionary or even ome xml) when creating the metadata with tifffile in the pyramid or list writer.
Basically to name each channel with the…
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Expected values for target_symbol, HGNC_ID, and uniprot_accession_number is either a single value or a comma delimited list of values.
With synonym support based on HGNC database: related issue: …
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Thank you for the execellent work! If I only have the PDB files for the antigen and antibody structures separately, and not the combined structure of the antigen-antibody complex, how should I use the…
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We really NEED for the collaboration with Neil Kelleher’s affinity reagents working group for the Organ Mapping Antibody Panels (OMAP), is an output in the ASCT+B reporter that would perhaps give 3 co…
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It is expected that the PDB outputs in `pdb/Chothia/` have their antibody chains renumbered according to Chothia scheme. However, `antibody_numbering_converter` does not seem to do that properly. For …
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We are very excited to use Alphalink2 to predict antigen-antibody structures for several complexes where we have DSSO based cross linking data. Alphalink2 is a really useful software and fits well int…