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Implementation of AssignmentRules for the update of the flux bounds, based on the following algorithm.
![flux_calculation](https://cloud.githubusercontent.com/assets/900538/10546867/011e4b72-7431-11e…
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- [x] Make mouse models
http://noctua.geneontology.org/editor/graph/gomodel:63a86a8600001386?model_id=gomodel:63a86a8600001386
- [ ] Missing upstream reaction? R-HSA-6800334 precedes R-HSA-5…
ukemi updated
2 months ago
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Hey,
So my friend is a biochemistry guy, and was unable to install and run the application according to your instructions, since they assume some significant computer science knowledge.
I helped…
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With the new subobject linking/alias system, we're not using UUIDs anymore. We should rename the "uuid" attribute to reflect this. Originally I was thinking just "id", but there are quite a few object…
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Hi,
I receive the following error when running WaterDock2
File "/home/mirix/Downloads/WaterDock-2.0/waterdock2.py", line 59, in
dockcheck.main(proteinfile, ligandfile)
File "/home/mir…
mirix updated
5 years ago
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[1]
I am only interested in ontologies which are registered in MIRIAM registry.
http://www.ebi.ac.uk/miriam/main/collections
There is a search option missing to restrict the results to only ontologi…
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## Short description of the problem
KeyError: 'reaction_network_ko_annotations_hash' when running `anvi-reaction-network`
## anvi'o version
```
Anvi'o .......................................: …
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Is the extracting bibtex working? I've been trying for a few days and it doesnt seem to work. Any suggestions?
rafed updated
4 years ago
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A tool to calculate deuterium exchange on macromolecules.
At ISIS we've been looking into the capabilities of RDKit (https://www.rdkit.org/), and it seems it can handle most of the stuff we would n…
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To be honest, I have no idea what this means. I was trying a new function for my homework and got this message. I have a windows laptop.
Here's my code and the error at the bottom. Please let me kno…