-
Trying to execute the 16s workflow via docker. From the documentation it sounded like only `usearch` would be missing due to its licensing issues, however it seems that `vsearch` is also excluded fro…
-
Hello,
I am using kraken-biom script to convert kraken2 report files to a biom file to run in phyloseq R. I managed to produce a unique biom file from 90 kraken reports, but when after using import_…
-
Hi,
This is my first time using PIPITS. I had no issue with the tutorial on mock samples but during pipits_process for my actual samples, I run into this issue: Error: None zero returncode: classif…
-
I would like to contribute a new feature for QIIME that implements feature selection based on information-theoretic methods. The proposed feature would require a biom file, and a TSV file with the cla…
-
Hello, I am trying to use biom in QIIME. and I am getting the following error when I run $biom on the command line:
-
Hi everyone,
I have an issue related to both the Qiime wrappers on the tools-iuc repo and to the Qiime Bioconda recipe (or rather one of its dependencies) so I'm not sure if this is the appropriate…
-
Dear All,
I am also having troubles install STAMP on macOS. It seems that Python 2.7 reached the end of its life on January 1st, 2020 thus we can not install stamp anymore on macOS?
I have tried…
-
I am trying to run. the "Downstream Analysis", I have my .tre and .biom files but I got the. following warning:
**ERROR: error in evaluating the argument 'x' in selecting a method for function 'uniqu…
-
Instead of CSV/TSV format.
-
Does it work with kraken2 outputs?
Cheers and many thanks
Rick