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Hello,
I am experimenting with different tools for transcriptome assembly on a data set of RNA-seq reads from tomato I obtained from SRA. I used StringTie to assemble the transcriptome and then ran…
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Hello, thanks for making this tool! I'm trying to run chromsyn but I get this error:
Rscript chromsyn.R busco=busco.fofn seqeuneces=sequences.fofn focus=scaffold16_size3654323
```
[Sun Jul 16 …
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Hi,
first of all, thanks for providing such a detailed description of the pipeline used to estimate viral domestication. I have sequenced the genome of a sawfly (Diprion pini) and thought I check if …
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Hello !
I am using Metaeuk through BUSCO on my genome in order to do some gene prediction.
I expect that the single-copy, full-length detected proteins should have in their vast majority a methy…
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I got an error message for the run_blobtools_create rule of the pipeline while all the other steps went apparently well.
Do you know what is happening here ?
I tried to run the command interactively…
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Hi, I am trying to add multiple busco.tsv, the command does not generate an error. However, when viewing the meta.json file, the information of these multiple files is not observed, only the last one …
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Hello
I noticed something strange after running Pilon twice on the sequence, the BUSCO score reduced from 93.6%(Obtained after Pilon 2 runs) to 76.4% when I ran Racon on the second Pilon polish.
…
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Hello,
I met a problem with GUESSmyLT:
```
$ Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 2
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 bowt…
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SNAP does a great job but I've had some issues using it lately..
I found that the generated ZFF file does not contain Einit and Eterm, which means that the predicted genes only have exon entries and …
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About a year ago the BUSCO dataset depository started, for whatever reason, being unaccessible from Ukrainian, Russian, Belarusian and Moldovan IP addresses. To deal with this problem, the authors of …