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Error occurs when trying to retrieve the tax ids from NCBI for adding taxonomic information to the 2 output tab delimited lists when running the get_dbcan_cazymes command on the St Andrews Kennedy Sup…
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Hello, I ran this command to functionally annotate 553551 amino acids sequences.
`metacerberus.py --amino SAIN23-1_MAGS_ASSEMBLY_SUBSET_553531.faa --hmm "KOFam_all, COG, VOG, PHROG, CAZy" --dir_ou…
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Please complete this report in full and as much detail as possible. It will help with getting the bug fixed far sooner!
**## To Reproduce
Please include the specific steps (including all code) you…
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Hii @linnabrown and @yinlabniu,
I have a small and quick question. On the http://www.cazy.org/Home.html webpage, the authors mentioned that "_in the end of 2023, we released on CAZy.org our expert …
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I got a strange error in step-10.
Here is my line of code to run MetaCerberus:
```
source ray-slurm-metacerberus.sh
metacerberus.py --prodigal data/processed/final_MAGs/all_final_MAGs/fixed_names …
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## Description
I'm trying to learn about OXO and I have set up a local instance using docker. I'm following the docs, and I want to create `datasets.csv` and follow the rest of the documentation walk…
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Create BCOs for all new datasets
**Dependencies:**
* #1450
* #1455
* #1479
* #1493
* #1494
* #1495
* #1467
* #1497
* #1498
* #1499
* #1496
* #1500
* #1501
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Please complete this report in full and as much detail as possible. It will help with getting the bug fixed far sooner!
## Describe the bug
Incomplete read error generated while trying to retrieve…
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New Datasets
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Requires new object in dataset-masterlist.json:
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- ML-ready (glycomic)
- ML-ready (glycoproteomic)
- human_proteoform_glycosylation_sites_pdc_ccrc.csv (GLY_000961)
- h…
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Dear author,
I came up with a problem when adding new database to existing projects. What shall I do?
(SqueezeMeta) zzzhou@dell-PowerEdge-R740:~$ add_database.pl /database/users/zzzhou/huichen/H…