-
- [x] Download `Complete Genome` from RefSeq
- [ ] Estimate codon usage bias: `CUB`
-
## Short description of the problem
When users zoom into a region of genomic context that does not include the actual stop codon of an ORF, anvi-inspect will put a STP codon at the farthest downstr…
-
Dear developers,
It seems to me that Codon is unable to perform a simple conversion from a list to a tuple. Here is a minimal example:
```python
l = [1, 2]
t = tuple[int, int](l)
print(t)
``…
-
It is my understanding that OrfM outputs continuous stretches of codons without a stop codon in the middle, but I am getting output with embedded stop codons, or what I believe are stop codons. I trie…
-
$ codon run manage.py
manage.py:10:1: error: unexpected indentation
This file is properly formatted according to normal python 🤷♂️
-
This is just an attempt to start a discussion about what it would take to upstream the changes (or perhaps some another solution) for codon.
-
Hello!
I'm trying to add introns to my GFF file using the command agat_sp_add_introns.pl --gff MY.gff --out MY_introns.gff
Unfortunately, I got the below error. I also tried using the commands …
-
- start codon and stop codon dist can be obtained from genome sequence
- GC content as well
-
I am using PoSeiDON for positive selection analysis, as mentioned in a recent publication (https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1012161). The software successfully g…
-
I'm not sure but seems in the "codon to amino acid" table the amino acid column should have title "amino acid" instead of "Protein":
![Selection_159](https://user-images.githubusercontent.com/46182…