-
I'm in the middle of making an [IRMA](https://doi.org/10.1186/s12864-016-3030-6) module for Adenoviruses. I came across your repo today and thought it would be useful for that purpose (I'm definitely …
-
Hello,
I have been using Pangolin to evaluate my tool on a simulated dataset.
However, I cannot get the lineage that I expect with pangolin. I would be glad if you could have a look why that cou…
-
Following up on https://github.com/ordinals/ord/issues/2574.
## Objective
The primary objective is to create a robust mechanism for ensuring data integrity and consistency across ordinal indexer…
-
This is not trivial for VCF-based input, since the sequences of each group are not known. It would be technically possible to reconstruct each group specific sequence as diagnositic sites are being se…
-
## Introduction
Hello. I am pleased to share some brainstorming towards advancing the state of the art with respect to educational exercises and activities, e.g., homework, quiz, and exam items, se…
-
- [x] add second scrubby step to keep chlamydia reads only
- [ ] consensus sequences:
- [x] use ragtag for scaffolding
- [ ] separate genome from plasmid
- [ ] collate genomes in single outp…
-
As I've been working on #549 to add support for SARS-CoV-2 references, I've had some trouble with running out of memory. I think it's partly that I'm running on equipment with less memory than I usual…
-
https://assets.geneious.com/manual/2020.1/static/GeneiousManualse43.html
Threshold settings
The Threshold determines which base in called in the consensus, and can be set to a percentage, or by us…
-
Hi,
fantastic tool, promises to solve a lot of our problems!
I managed to install it (Ubuntu 18.04, conda installation as proposed in https://github.com/SorenKarst/longread_umi/issues/36), but if…
scogi updated
2 years ago
-
Not even sure if pangolin itself is the right repository to mention this issue/question or if it has been explained before.
While using some of our Illumina sequence data to compare it with our ON…