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Ilya Karuseichyk, Giacomo Sorelli, Manuel Gessner, Mattia Walschaers, Nicolas Treps
> We analyze the problem of resolving two point-sources in the case of mutually coherent sources with arbitrary q…
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The traceback:
```
Error in py_call_impl(callable, call_args$unnamed, call_args$named) :
FileNotFoundError: [Errno 2] No such file or directory: '/home/rstudio/workspace//data/SspArc0008_10x_c…
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Hi - thanks for a nice tool! I have a quick question regarding the best approach for using cellsnp/vireo in our experimental setup:
We have generated data from 8 separate 10x Genomics single-cell rea…
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ran into a problem when converting into unmapped bam files. need to investigate eventually, but for now will have to create a container using picard version that brian was using.
https://github.com…
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### Description of feature
Follow up to #99
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### Name of the tool
STAR (STARsolo)
### Tool homepage
https://github.com/alexdobin/STAR/blob/master/docs/STARsolo.md
### Tool description
The single-cell / demultiplexing version of ST…
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Hi! I input custom adapter using adapter.py, these adapters can be found if i use -o function for trimming
"30,139 / 32,299 reads had adapters trimmed from their end (2,444,748 bp removed)"
but …
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Anyone wants to speculate about good to add features?
My list is mostly contribs to add:
- websocket endpoint benchmarking tool
- basic demultiplexing example wrapper
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The 10x Fixed RNA Profiling kit has some benefits with respect to the standard kit. For example, cells can be stored before library prep, there is a gene targeting mechanism based on specific targete…
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cutadapt 4.2 with Python 3.10.9
Attempted to demultiplex nanopore single-end reads with combinatorial dual indexes, but it didn't work and created a file called `{name1}-{name2}.fastq.gz`
`cutadap…