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I see other users reported the same issue:
https://github.com/nanoporetech/dorado/issues/1029
The reply said it was because of the sup@v5 modification model. However, I've been using this model fo…
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Hello,
I would like to run 5hmC and 5mC detection.
in this case should I use the _dna_r9.4.1_450bps_modbases_5mc_hac.cfg_ or the _dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg_ to detect all th…
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Hi
When performing the analysis of finding m6A in DNA using alternative model with the default values the methylation rates are too high, for the control ones which were pcr products causing misstru…
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I've been trying to use TCGAbiolinks to download the CPTAC data but I've run into a problem with the methylation data. I have been able to download the data but I can't integrate it together using GDC…
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Hello, I am trying to analyze RRBS data from M. californianus and there is a published scaffold genome that I used in Bismark to get bam and bed files. I want to visualize these against the genome so …
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Following terms are request for supporting annotation of Beta Cell Genomics studies.
DNA methylation profiling by ChIP-chip assay
epigenetic modification assay
transcription profiling by MPSS assa…
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#### What is the goal of the ticket/issue?
Develop CNV Visualizations plots and tables API endpoints based on the plots designed in [the 'CNV Visualization Design' ticket from the PediatricOpenTarget…
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Please can I use this package on any of Pacbio or EM_seq-based methylation data?
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Hello,a few days ago I read a paper "MethylC-analyzer: a comprehensive downstream pipeline for the analysis of genome-wide DNA methylation" and I am trying to run the code "python MethylC.py command m…
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**artificially induced biological process**
* Parent: 'material processing'
* Definition: A material processing protocol in which a naturally-occurring biological process is artificially induced.
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