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It seems that load_cytoset_from_fcs doesn't actually accept the emptyValue argument. When I read in a set of fcs files using `read.flowSet(fcs_files, emptyValue = FALSE)` this works but when I try the…
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Hello!
I'm using Pytometry to analyze my Flow Cytometry data. I've already used Scanpy for the analysis of scRNA-seq data.
I want to use the scanpy dot plot function on the anndata created with the …
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Dear authors, thanks for the great tool you developed!
I need some recommendations regarding my Smudgeplots. Because they are not making sense and I am lost at the moment.
So i though it might be he…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
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Hello! I am working in the scientific community with pandas, and I use it especially with fcs files, a more specialized scientific file format. I have been using my own scripts to convert from fcs to …
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Hello,
This is my first time posting an issue and new to coding, so if I am missing some data to explain the whole problem, please let me know.
I am following the CyTOF workflow: differential …
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The curators are working on edits to the current README template (https://docs.google.com/document/d/1_Lg3xtLFwFbOI697bIuBPPLpQKqYLJ5I7j8UXVlXyIQ/edit)
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Hi there,
Thank you for the package.
I have FCS files acquired by the spectral flow Aurora and had been unmixed.
I then did Time gate, and gated out doublets and dead cells in FlowJo.
Next…
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Hi there,
I am trying to assemble a plant genome estimately of 90Mb (estimated with flow cytometry) with HiFi reads, however, the primary contig I assembled is around 270Mb to the largest, when I t…
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Hi @ebecht
In issue #7 , you mentioned we can use the "autofluorescence control" channel (resulted from using "Unstained control" that we usually run to do autofluorescence adjustment in spectral …