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Hi Benoit,
I am implementing a parse for GeneRax output, and specifically the reconciled tree in NHX format as that's how they come out of the program with the `--reconciliation-samples` option.
…
flass updated
4 years ago
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Hello,
I am using wgd to examine ancient genome duplication in my focal group.
I ran wgd pre on two focal species to filter cds to those that would be accepted by wgd. All went well.
I then…
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Good morning ,
I want to ask you if we can say that cellranger and STARsolo generated to same output in my case.
Thank you
**cellranger count:**
Estimated Number of Cells,Mean Reads per Ce…
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Dear Dr. Lind,
I'm generating a custom eukdetect db and I'm stucked at get_uncomputed_taxid_per_busco.py. It fails with the following message:
"""
python /home/qi47rin/proj/00-git/EukD…
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Hello!
Thank you for making such a great and useful tool!
I am not seeing a place where I can define control samples. Is there an option for this within the package?
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Dear Dengfeng,
I am using purge_dups on a diploid canu assembly (haplotypes not collapsed during assembly because of high heterozygosity). I have run step 1-3 of the pipeline (I don't have an alter…
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The creation of the ddt_data.js file will have an amount of duplicate entries of mutations according to however many file_names/sample_names are included in the lineage analysis process.
For example,…
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Hi, I've come across the problem that oc does not annotate SV vcf's are there plans to support SV in a future or maybe thereis a workaround?
the common line format:
`chr1 964964 20 N 137.6 . SVTYP…
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if possible?
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Hi, I'm working with a dataset where many genes have duplicates. I'm feeding in a master species tree to serve as the 'background', but it seems like the RERconverge expects to only have one gene per …
ghost updated
2 years ago