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Hi,
Thanks for this super nice method and the pipeline. In the minimap2 bam outputs, I don't see any junction reads even though minimap2 is run with the `-x splice` parameter. Sashimi plots are all…
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~/software/RNAEditingIndexer$ docker run -u $(id -u ${gplab}):$(id -g ${gplab})
-v /the_path/to_your_bams:/home/gplab/software/RNAEditingIndexer/Aligned.out_sort.bam:ro
-v /the_path/to_your_outp…
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1. [Integrating ChIP-seq with other functional genomics data](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888983/pdf/ely002.pdf)
2. [2014-nature review-Identifying and mitigating bias in next-gener…
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This is a request to update the "genome coverage" [[OBI:0001939](http://purl.obolibrary.org/obo/OBI_0001939)]
**New parent term:** sequence data [[OBI:0000973](http://purl.obolibrary.org/obo/OBI_00…
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I am struggling about how to infer strand information with REDItools by using -s parameter for stranded RNA-seq.
For sure by choosing different -s parameter [0/1/2/12] for one sample, the substitutio…
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Running ``sourmash plot --pdf --labels example.npy`` with ~200 signatures gives plots where the labels are too large and therefore overlap.
Looking at https://github.com/sourmash-bio/sourmash/blob/…
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First off, Wow! well done @gamcil, well done. I've went over so many tools and packages and what not lately to try and generate such figures and clinker is by far the easiest and most visually appeali…
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Hi, @cmdcolin
This plugin looks awesome! I am interested in presenting these variation from whole genome alignment for A.thaliana genomes.
`maf2bed` looks fine, but the jbrowser seems stuck for t…
baozg updated
5 months ago
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Currently in `app.module.ts` when registering the Mongoose module, we set a large `maxTimeMS`, since that seems to fix some issues people have had loading large data sets. We want to avoid this if we …
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Dear authors.
I know that intervar can point out the annovar db to be used internally by editing the confing.ini file, but in reality, this can only change the file to be downloaded. From here, I d…