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This S98F seems to be a new convergent site.
KP.2.3(with 31del)+C28714T+C20233T(Orf1b:P2256S)+C11575T+T15207C,C21855T(S:S98F)
GISAID query: C21855T,C28714T, C20233T
No. of seqs: 16(USA 4 Canada 1…
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Reilan was manually uploading assemblies from GISAID per my request. I gave her all of the same assemblies and information that ran correctly for me. This was a test. Her computations failed at 20% vi…
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KP.3.1.1+C21815T(S:P85S)
GISAID query: C21815T,C12616T,A13121T
No. of seqs: 6(UK 3 USA 1 Portugal 1 Italy 1)
First: EPI_ISL_19321477, USA, 2024-7-11
Latest: EPI_ISL_19357802, UK, 2024-8-8
U…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1843
KP.2.3(with 31del)+C28714T+C11518T+C25083T(S:A1174V)
GISAID query: C28714T, C11518T, C25083T
No. of seqs: 104(Belgium 1…
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There seems another KP.2.3-445P branch now.
KP.2.3+S:S31del+C28714T+C26894T+C7948T+A22896C(S:H445P)+C21816A(S:P85Q)
GISAID query: C28714T, C26894T, C21816A
No. of seqs: 4( Japan 1(from India) US…
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LB.1.3+del26155-26157 (ORF3a:V255-) +G24872A(S:V1104I) edited
GISAID query: G24872A, C18131T, G22111T
No. of seqs: 6(USA 1(from France) Ireland 1 Sweden 4)
First: EPI_ISL_19272675, Ireland, 2024-…
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LB.1+G23593T(S:Q677H)
GISAID query: G23593T, del21653, G22111T,-18131,-4784,-3724
No. of seqs: 6(Spain 1 USA 1 UK 1 Canada 3)
First: EPI_ISL_19230847, Canada, 2024-6-18
Latest: EPI_ISL_1927447…
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XDV.1+C28657T+C9430T,del21653_21655(S:S31del)
GISAID query: C28657T, C9430T,del21653
No. of seqs: 3(China 1 South Korea 2)
This is the 1st time I see a branch with S31-+S:F456L without R346T or…
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KP.3.1.1+T15567C, A23723G(S:S721G)
GISAID query: T15567C, A23723G, C12616T
No. of seqs: 6(Denmark 3 USA 2 (from Germany), Sweden 1)
First: EPI_ISL_19299670, 2024-7-8, Denmark
Latest: EPI_ISL_1…
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Currently the release workflow requires manually interacting with the `GISAID` metadata tab. This issue and accompanying PR suggest these changes.
- Get latest version of metadata from GISAID tab
…