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Hello!
I have two questions about TrimGalore. I usually use TrimGalore for RNA-seq, ChIP-seq, GRO-seq and eCLIP-seq.
When TrimGalore detects adapter sequence automatically, for example, there ar…
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**Describe the issue**
Hello, I would like to add colorful tracks underneath top 10 genes. Can I modify the pathway tracks to 1) show how the sample was sequenced (Illumina vs. IonTorrent vs. Both)…
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Hello!
I have some reverse compliment single end fungal ITS1 reads obtained via IonTorrent sequencing that I am trying to use ITSxpress on to extract the ITS1 region. When I run ITSxpress, a fastq …
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**Issue**
Novoalign version 4 has new tune features that are sets of parameters specifically tested against data from individual sequencers such as Novaseq, Hiseq...etc. These features are availabl…
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Hi,
I have limited knowledge of processing IonTorrent data but running into a consistent error when running SPAdes.
I cant figure out what the issue is... sorry if its simple and thanks in advance …
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Hello,
I want diamond to find frameshifts in assemblies generated from IonTorrent data that occur at homopolymers.
I have generated a dummy example with a dna sequence and its corresponding prot…
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Thank you so much, TJ. In fact, I don't know the primer of IonTorrent amplicon, I just used the primer for PCR-CE. And the ref and annotation file from the product of the primer. You say minimum al…
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**Describe the bug**
Building from source on CentOS 7.9
Downloaded prerequisite ldc (ldc2-0.17.6-linux-x86_64), set PATH an LIBRARY_PATH per ldc install path:
export PATH=$PATH:`pwd`/ldc2-0.17…
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Hello and thanks for the promising tool. I've install the pipeline and am trying to run the example using: `snakemake --use-conda --conda-frontend mamba -p -r -j 10`
Here's the error I'm getting (w…
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We've gone through two iterations of ways to bulk-identify datasets for inclusion in Gemma.
It started with using Gemma tools in conjunction with some bash scripts to process and filter the results…