-
Since cluster module needs too much memory. (I have 2 million nucleotide seqs, about 30G, and 1T memory, and segment fault occurred).
I try to use LINCLUST instead. But I also want a better perf…
-
Hi,
Here is an error after I ran Unicycler. It seems like a bug of spades. Is there any way to solve this problem?
Thank you.
== Error == system call for: "['./SPAdes-3.15.4-Linux/bin/spade…
CS-CH updated
1 month ago
-
Hi,
I am wondering if I can get the kmer counts along with the unitigs fasta files.
Thanks,
Moustafa
-
Attempting to run br on a 15 Gb dataset of reads > 10kb with parameters:
`br -k 19 -i STL_F2_isoline_pooled.10k.fa -o brutal-out -t 32`
It gives the error, "Error: Can't compute minimal abundance"…
-
hey there getting a core dump only when using the `-H` option. Full cmd:
```
~/TideHunter-v1.5.4/bin/TideHunter -H --kmer-length 8 --window-size 5 --min-copy 3 --min-period 41 --min-len 41 --out-fmt…
-
Hello,
Many users of PanGenie might wish to use vg giraffe to align reads for short-variant calling, but use PanGenie for structural variant calling.
Inspired by PanGenie, the new haplotype-bas…
-
Hi Sam,
Thanks for all the effort on Uncalled4, this is really a great package.
I've noticed you started working on readstats on the dev branch which would be helpful for what I'm trying to do, wh…
-
Creating an index with KaMRaT for a set of kmer features results in the following error:
```
kamrat index -intab kmer_features_error.tab -outdir kamrat_output/ -klen 33 -unstrand
[ERROR] unicity …
mrtnb updated
3 months ago
-
Hello! I absolutely love the ORP and have run it successfully with a lot of my reads. However, I'm running into quite the head scratcher for reads that are 75 bp long or less. The program documentatio…
-
Hi there!
We used Jellyfish and GenomeScope on pair-end NGS data to perform k-mer analysis on a new sequenced species of unknown genome size and unknown ploidy nature.
When I've run Genomescope…