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Hello,
I've been running the most recent Dockerized version of Trinotate. I completed steps 2, 3, and 4 as seen in https://github.com/Trinotate/Trinotate/wiki/Software-installation-and-data-require…
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Commonly, collaborators using the cellbrowser request a "split" view to allow them to see cells from different samples/conditions/treatments in separate panes. They want to be able to split the datase…
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Despite the firmware being installed to `/usr/lib/firmware/updates/intel/vpu/*`, it seems that dracut is not picking up the new firmware when generating the initramfs. Use `sudo lsinitrd` to confirm t…
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## Introduction
Currently, records annotations/predictions only support store annotation info for just one annotator agent. The idea is to support several agents, for both, annotations and prediction…
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Hi,
I use eggnog-mapper to annotate large sets of metagenomic datasets, e.g. the GMGC (GMGC10.95nr.faa.gz >> 300 million sequences).
In a recent experiment, I found that the the annotation resu…
cschu updated
4 months ago
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Dear MicrobeAnnotator developers,
I tried to annotate two bins with the light mode using blast as my search method, however, it returned a FIleNotFoundError with “01.KEGG_Regular_Module_Informatio…
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Hi Dr. Yu!
I was trying to use `ko2name` fuction to get the name of pathways with pathway numbers. I found a lot of pathway numbers don't work with `ko2name` even if they do have descriptions on K…
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Hi Joel and community,
I ran EnrichM on my MAGs and it worked fine for nucleotide fasta files (.fa). I'd like to run protein through the pipeline so I annotated the MAGs using Prokka and I tried ru…
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Is this FoLiA valid?
Both folialint and foliavalidator reject it (on different grounds)
```xml
Dit is test. zin 2.
D…
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I would like to ask whether any option in command line of emapper.py to get a full result of GO and KEGG assignment.
For example,
in the annotation output there is only term such as GO:0097159 but …